fibxform - Apply coordinate transformations to point coordinates
in .fib file.
A file with fiber tracking results from the UNC Fiber Tracking
tool is read from Standard Input and one or more (concatenated) coordinate
transformations are applied to all fiber point coordinates. The result is
written to Standard Output, again in UNC fiber file format.
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level
<integer>
- Set verbosity level.
- --verbose,
-v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads
<integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
- --inversion-tolerance
<double>
- Numerical tolerance of B-spline inversion in mm. Smaller values will lead
to more accurate inversion, but may increase failure rate. [Default:
0.001]
- --source-image
<image-path>
- Set source image of the transformation (i.e., an image defining the space
in which fiber tracking was performed) to correct for differences in
orientation and coordinate space. [Default: NONE]
- --target-image
<image-path>
- Set target image of the transformation (i.e., the image that the fiber
track points are mapped into) to correct for differences in orientation
and coordinate space. [Default: NONE]
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg
Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
http://www.fsf.org/licensing/licenses/gpl.html
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant
AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence
(N-CANDA): Data Integration Component. From April 2009 through September
2011, CMTK development and maintenance was supported by the NIBIB under
Grant EB008381.