lsba [options] targetImage atlasIntensity1 atlasLabels1
[atlasIntensity2 atlasLabels2 [...]]
This tool combines multiple multi-class segmentations from
co-registered and reformatted atlases using locally-weighted Shape-Based
Averaging.
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level
<integer>
- Set verbosity level.
- --verbose,
-v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads
<integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
- --patch-radius
<none>
- Radius of image patch (in pixels) used for local similarity computation.
[Default: 5]
- --search-radius
<none>
- Search radius for local image patch matching. The algorithm finds the
best-matching patch within this radius by exhaustive search. [Default:
0]
- --no-local-outliers
- Detect and exclude local outliers in the Shape Based Averaging
procedure.
- --no-global-outliers
- Detect and exclude global outliers by removing poorly correlated atlases
prior to local SBA procedure.
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg
Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
http://www.fsf.org/licensing/licenses/gpl.html
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant
AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence
(N-CANDA): Data Integration Component. From April 2009 through September
2011, CMTK development and maintenance was supported by the NIBIB under
Grant EB008381.