mk_analyze_hdr - Make Analyze header file
mk_analyze_hdr [options] [output.nii]
Make header file according Analzye 7.5 format based on
user-supplied parameters for geometry, data type, orientation, etc.
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level
<integer>
- Set verbosity level.
- --verbose,
-v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads
<integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
- --dims
<string>, -D <string>
- Set dimensions in voxels
- --voxel
<string>, -V <string>
- Set voxel size in [mm]
- --offset
<float>, -O <float>
- Binary data file offset [Default: disabled]
- --byte,
-b
- 8 bits, unsigned (this is the default)
- --char,
-c
- 8 bits, signed
- --short,
-s
- 16 bits, signed
- --ushort,
-u
- 16 bits, unsigned
- --int, -i
- 32 bits signed
- --float,
-f
- 32 bits floating point
- --double,
-d
- 64 bits floating point
- --big-endian,
-B
- Big endian data [This is the default]
- --little-endian,
-L
- Little endian data
- --axial
- Set slice orientation to axial (this is the default)
- --axial-flip
- Set slice orientation to reverse axial
- --sagittal
- Set slice orientation to sagittal
- --sagittal-flip
- Set slice orientation to reverse sagittal
- --coronal
- Set slice orientation to corona;
- --coronal-flip
- Set slice orientation to reverse coronal
- --legacy
- Legacy mode; do not write 'SRI1' tag into header
- --SRI1
- Force 'SRI1' tag even if not present in imported header
- --import
<string>, -I <string>
- Import data from given header file. [Default: NONE]
- --description
<string>
- Set description string [max. 80 characters] [Default: NONE]
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg
Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
http://www.fsf.org/licensing/licenses/gpl.html
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant
AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence
(N-CANDA): Data Integration Component. From April 2009 through September
2011, CMTK development and maintenance was supported by the NIBIB under
Grant EB008381.