xform2scalar - Extract scalar measures from transformations and
deformation fields
xform2scalar InputImage XformList
This tool extracts scalar measures from transformations and
deformation fields, sampled at grid locations, and writes the results to an
image. Examples of supported scalar measures are: x,y,z component of the
transformation, magnitude of the transformation, and Jacobian
determinants.
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --xml
- Write command line syntax specification in XML markup (for Slicer
integration).
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level
<integer>
- Set verbosity level.
- --verbose,
-v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads
<integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
- --mode
- Mode of operation: type of scalar measure to be extracted. Supported
values: "x-component", "y-component",
"z-component", "magnitude", where the default is
"magnitude", or use one of the following:
- --warp-only,
-w
- Output warp component only (excluding affine).
- --type
- Scalar data type of output image. Supported values: "float",
"double", where the default is "double", or use one of
the following:
- --float
- Single-precision float.
- --double
- Double-precision float. [This is the default]
- --output
<image-path>, -o <image-path>
- Output path for image with extracted scalar data. [Default:
NONE]
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg
Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
http://www.fsf.org/licensing/licenses/gpl.html
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant
AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence
(N-CANDA): Data Integration Component. From April 2009 through September
2011, CMTK development and maintenance was supported by the NIBIB under
Grant EB008381.