CNVKIT_IMPORT-PICARD(1) | User Commands | CNVKIT_IMPORT-PICARD(1) |
cnvkit_import-picard - Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files.
The input file is generated by the PER_TARGET_COVERAGE option in the
CalculateHsMetrics script in Picard tools.
If 'antitarget' is in the input filename, the generated output filename will
have the suffix '.antitargetcoverage.cnn', otherwise
'.targetcoverage.cnn'.
usage: cnvkit import-picard [-h] [-d DIRECTORY] targets [targets ...]
September 2022 | cnvkit import-picard 0.9.9 |