DOKK / manpages / debian 12 / csb / csb-bfite.1.en
CSB-BFITE(1) User Commands CSB-BFITE(1)

csb-bfite - models non-rigid displacements in protein ensembles with outlier-tolerant probability distributions

usage: csb-bfite [-h] [-c CHAIN] [-s {student,k}] [-a ALIGNMENT] [-o OUTFILE]

[-n NITER] pdb

Python application for robust structure superposition of an ensemble of structures. bfite models non-rigid displacements in protein ensembles with outlier-tolerant probability distributions.

full path to the ensemble

show this help message and exit
Chain (default=A)
Scale mixture distribution (default=student)
Alignment in fasta format defining equivalent positions Assumes that chain1 is the first sequence of the alignment and chain2 the second sequence
file to which the rotated second structure will be written (default=bfit.pdb)
Number of optimization steps (default=200)

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

November 2017 csb-bfite 1.2.5