DOKK / manpages / debian 12 / csb / csb-csfrag.1.en
CSB-CSFRAG(1) User Commands CSB-CSFRAG(1)

csb-csfrag - build a dynamic library of analogous fragments

usage: csb-csfrag [-h] -d DATABASE -s SHIFTS [-w WINDOW] [-t TOP] [-c CPU]

[-v VERBOSITY] [-o OUTPUT] [-f] QUERY

CSfrag: build a dynamic library of analogous fragments, given a list of assigned chemical shifts.

query sequence (FASTA file)

show this help message and exit
PDBS25 database directory (containing PDBS25cs.scs)
assigned chemical shifts table (NMR STAR file fragment)
sliding window size (default=8)
maximum number per starting position (default=25)
maximum degree of parallelism (default=4)
verbosity level (default=1)
output directory (default=.)
make an additional filtered fragment map of centroids (default=False)

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

November 2017 csb-csfrag 1.2.5