csb-precision - measure the precision and coverage of a fragment
library
usage: csb-precision [-h] -p PDB -n NATIVE [-c
CHAIN] [-t TOP] [-C CPU]
- [-r RMSD] [-o OUTPUT] [-s]
- library
Measure the precision and coverage of a fragment library stored in
Rosetta NNmake format.
- library
- Fragment library file in Rosetta NNmake format
- -h, --help
- show this help message and exit
- -p PDB, --pdb
PDB
- the PDB database (a directory containing all PDB files)
- -n NATIVE, --native
NATIVE
- native structure of the target (PDB file)
- -c CHAIN, --chain
CHAIN
- chain identifier (if not specified, the first chain)
- -t TOP, --top
TOP
- read top N fragments per position (default=25)
- -C CPU, --cpu
CPU
- maximum degree of parallelism (default=4)
- -r RMSD, --rmsd
RMSD
- RMSD cutoff for precision and coverage (default=1.5)
- -o OUTPUT, --output
OUTPUT
- output directory (default=.)
- -s,
--save-structures
- create a PDB file for each fragment, superimposed over the native
(default=False)
This manpage was written by Andreas Tille for the Debian
distribution and can be used for any other usage of the program.