DOKK / manpages / debian 12 / emboss / cpgreport.1e.en
CPGREPORT(1e) EMBOSS Manual for Debian CPGREPORT(1e)

cpgreport - Identify and report CpG-rich regions in nucleotide sequence(s)

cpgreport -sequence seqall -score integer -outfile outfile -outfeat featout

cpgreport -help

cpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).

-sequence seqall

-score integer

This sets the score for each CG sequence found. A value of 17 is more sensitive, but 28 has also been used with some success. Default value: 17

-outfile outfile

-outfeat featout

File for output features

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

cpgreport is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0