dbgeturl - Retrieve links to database entries for a named
database, data type and data identifier
dbgeturl -database string
-datatype string
-identifier string
[-outfile outfile]
dbgeturl -help
dbgeturl is a command line program from EMBOSS (“the
European Molecular Biology Open Software Suite”). It is part of the
"Utils:Misc" command group(s).
-database string
This is the name of a database from the catalogue of
public databases in the EMBOSS data file DRCAT.dat. If you are unsure of the
available databases use dbfind. If you have a database name but are not sure
its valid, use isdbname.
-datatype string
This is the name of a retrievable datatype from the
catalogue of public databases in the EMBOSS data file DRCAT.dat. The names are
terms from the 'data' branch of the EDAM ontology,
http://edamontology.sourceforge.net/. If you are unsure of the available
retrievable datatypes for a given database, use dbtellquery. If you have a
datatype name but are not sure its valid, use isdbdata.
-identifier string
This is a data identifier (e.g. a sequence accession
number) that is used to specify the data (of type 'datatype') to retrieve. If
you're unsure of the data identifier(s) that are used for a given query
(database/datatype) use dbtellquery. The types of data identifier are listed
under the 'Data identifier' branch of the EDAM ontology
(http://edamontology.sourceforge.net/). For example values, see the catalogue
of public databases in the EMBOSS data file DRCAT.dat. If you have a data
identifier but are unsure of its type, use idtell.
-outfile outfile
Default value: stdout
Bugs can be reported to the Debian Bug Tracking system
(http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
dbgeturl is fully documented via the tfm(1) system.
Debian Med Packaging Team
<debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual
page.
This manual page was autogenerated from an Ajax Control Definition
of the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.