DOKK / manpages / debian 12 / emboss / newcpgreport.1e.en
NEWCPGREPORT(1e) EMBOSS Manual for Debian NEWCPGREPORT(1e)

newcpgreport - Identify CpG islands in nucleotide sequence(s)

newcpgreport -sequence seqall -window integer -shift integer -minlen integer -minoe float -minpc float -outfile outfile

newcpgreport -help

newcpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).

-sequence seqall

-window integer

Default value: 100

-shift integer

Default value: 1

-minlen integer

Default value: 200

-minoe float

Default value: 0.6

-minpc float

Default value: 50.

-outfile outfile

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

newcpgreport is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0