DOKK / manpages / debian 12 / fabio-viewer / eiger2crysalis.1.en
EIGER2CRYSALIS(1) User Commands EIGER2CRYSALIS(1)

eiger2crysalis - Portable image converter based on FabIO library to export Eiger frames (including te one from LImA) to a set of esperanto frames which can be imported into CrysalisPro.

usage: eiger2crysalis [-h] [-V] [-v] [--debug] [-l] [-o OUTPUT] [-O OFFSET]

[-D DUMMY] [--dry-run] [--calc-mask] [-e ENERGY]
[-w WAVELENGTH] [-d DISTANCE] [-b BEAM BEAM] [--alpha ALPHA] [--kappa KAPPA] [--phi PHI] [--omega OMEGA] [--theta THETA] [--rotation ROTATION] [--transpose] [--flip-ud] [--flip-lr] [IMAGE ...]

Portable image converter based on FabIO library to export Eiger frames (including te one from LImA) to a set of esperanto frames which can be imported into CrysalisPro.

File with input images

show this help message and exit
output version and exit
show information for each conversions
show debug information

show the list of available formats and exit
output directory and filename template
index offset, CrysalisPro likes indexes to start at 1, Python starts at 0
Set masked values to this dummy value

do everything except modifying the file system
Generate a mask from pixels marked as invalid. Off by default since it takes time

Energy of the incident beam in keV
Wavelength of the incident beam in ??
Detector distance in millimeters
Direct beam in pixels x, y

Goniometer angle alpha value in deg. Constant, angle between kappa/omega.
Goniometer angle kappa value in deg or formula f(index).
Goniometer angle phi value in deg. or formula f(index). Inner-most rotation.
Goniometer angle omega value in deg. or formula f(index). Outer-most rotation.
Goniometer angle theta value in deg. or formula f(index). Tilt angle of the detector.

Rotate the initial image by this value in degrees. Must be a multiple of 90??. By default 180 deg (flip_up with origin=lower and flip_lr because the image is seen from the sample).
Flip the x/y axis
Flip the image upside-down
Flip the image left-right

return codes: 0 means a success. 1 means the conversion contains a failure, 2 means there was an error in the arguments

November 2022 eiger2crysalis 0.14.0