eiger2crysalis - Portable image converter based on FabIO library
to export Eiger frames (including te one from LImA) to a set of esperanto
frames which can be imported into CrysalisPro.
usage: eiger2crysalis [-h] [-V] [-v] [--debug] [-l] [-o OUTPUT]
[-O OFFSET]
- [-D DUMMY] [--dry-run] [--calc-mask] [-e ENERGY]
- [-w WAVELENGTH] [-d DISTANCE] [-b BEAM BEAM] [--alpha ALPHA] [--kappa
KAPPA] [--phi PHI] [--omega OMEGA] [--theta THETA] [--rotation ROTATION]
[--transpose] [--flip-ud] [--flip-lr] [IMAGE ...]
Portable image converter based on FabIO library to export Eiger
frames (including te one from LImA) to a set of esperanto frames which can
be imported into CrysalisPro.
- IMAGE
- File with input images
- --dry-run
- do everything except modifying the file system
- --calc-mask
- Generate a mask from pixels marked as invalid. Off by default since it
takes time
- --alpha
ALPHA
- Goniometer angle alpha value in deg. Constant, angle between
kappa/omega.
- --kappa
KAPPA
- Goniometer angle kappa value in deg or formula f(index).
- --phi PHI
- Goniometer angle phi value in deg. or formula f(index). Inner-most
rotation.
- --omega
OMEGA
- Goniometer angle omega value in deg. or formula f(index). Outer-most
rotation.
- --theta
THETA
- Goniometer angle theta value in deg. or formula f(index). Tilt angle of
the detector.
- --rotation
ROTATION
- Rotate the initial image by this value in degrees. Must be a multiple of
90??. By default 180 deg (flip_up with origin=lower and flip_lr because
the image is seen from the sample).
- --transpose
- Flip the x/y axis
- --flip-ud
- Flip the image upside-down
- --flip-lr
- Flip the image left-right
return codes: 0 means a success. 1 means the conversion contains a
failure, 2 means there was an error in the arguments