FASTANI(1) | User Commands | FASTANI(1) |
fastANI - Fast alignment-free computation of whole-genome Average Nucleotide Identity
----------------- fastANI is a fast alignment-free implementation for computing whole-genome Average Nucleotide Identity (ANI) between genomes ----------------- Example usage: $ fastANI -q genome1.fa -r genome2.fa -o output.txt $ fastANI -q genome1.fa --rl genome_list.txt -o output.txt
Available options ----------------- -h, --help
-r <value>, --ref <value>
--refList <value>, --rl <value>
-q <value>, --query <value>
--ql <value>, --queryList <value>
-k <value>, --kmer <value>
-t <value>, --threads <value>
--fragLen <value>
--minFraction <value>
--visualize
--matrix
-o <value>, --output <value> [required]
-v, --version
This manpage was written by Nilesh Patra for the Debian
distribution and
can be used for any other usage of the program.
March 2021 | fastANI 1.32 |