DOKK / manpages / debian 12 / fastaq / fastaq-to_fasta.1.en
FASTAQ-TO_FASTA(1) User Commands FASTAQ-TO_FASTA(1)

fastaq_to_fasta - Converts a variety of input formats to nicely formatted FASTA format

usage: fastaq_to_fasta [options] <infile> <outfile>

Converts a variety of input formats to nicely formatted FASTA format

Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip
Name of output file

show this help message and exit
Number of bases on each sequence line of output file. Set to zero for no linebreaks in sequences [60]
Remove everything after first whitespace in every sequence name
Die if any of the output sequence names are not unique
October 2022 fastaq_to_fasta 3.17.0