DOKK / manpages / debian 12 / genometester / glistcompare.1.en
GLISTCOMPARE(1) GenomeTester User Manuals GLISTCOMPARE(1)

glistcompare - generate union, intersection or difference of k-mers from two list files


-v, --version - print version information and exit

-h, --help - print this usage screen and exit

-u, --union - union of input lists

-i, --intersection - intersection of input lists

-d, --difference - difference of input lists

-dd, --double_difference - double difference of input lists

-du, --diff_union - subtract first list from the second and finds difference

NUMBER - specify number of mismatches (default 0, can be used with -diff and -ddiff)

-c, --cutoff NUMBER - specify frequency cut-off (default 1)

-o, --outputname STRING - specify output name (default "out")

NOTE: rules min, subtract, first and second can only be used with finding the intersection.

-ss --subset METHOD SIZE - make subset with given method (rand_unique)

--count_only - output count of k-mers instead of k-mers themself

--disable_scouts - disable list read-ahead in background thread

-D - increase debug level

You could find some usage examples in /usr/share/doc/genometester/

glistquery(1), glistmaker(1), gmer_caller(1), gmer_counter(1)

31 May 2018 GenomeTester