gt-convertseq - Parse and convert sequence file formats
(FASTA/FASTQ, GenBank, EMBL).
gt convertseq [options] file [...]
-v [yes|no]
be verbose (default: no)
-r [yes|no]
reverse complement sequences (default: no)
-showfilelengthvalues [yes|no]
show filelengths (default: no)
-noseq [yes|no]
do not show sequences (default: no)
-fastawidth [value]
FASTA output line width, 0 for unlimited (default:
60)
-contractdnawc [yes|no]
replace stretches of DNA wildcards with a single N
(default: no)
-contractproteinwc [yes|no]
replace stretches of protein wildcards with a single
X (default: no)
-o [filename]
redirect output to specified file (default:
undefined)
-gzip [yes|no]
write gzip compressed output file (default: no)
-bzip2 [yes|no]
write bzip2 compressed output file (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit
Report bugs to
https://github.com/genometools/genometools/issues.