DOKK / manpages / debian 12 / genometools / gt-readjoiner-overlap.1.en
GT-READJOINER-OVER(1) GenomeTools Manual GT-READJOINER-OVER(1)

gt-readjoiner-overlap - Compute suffix prefix matches from encoded sequence.

gt readjoiner overlap [option ...] [file]

-readset [string]

specify the readset name (default: undefined)

-l [value]

specify the minimum SPM length (default: 0)

-parts [value]

specify the number of parts (default: 0)

-memlimit [string]

specify maximal amount of memory to be used during index construction (in bytes, the keywords MB and GB are allowed) (default: undefined)

-v [yes|no]

be verbose (default: no)

-q [yes|no]

suppress standard output messages (default: no)

-help

display help and exit

-version

display version information and exit

Report bugs to https://github.com/genometools/genometools/issues.

11/28/2022 GenomeTools 1.6.2