gt-tallymer-occratio - Compute occurrence ratio for a set of
sequences represented by an enhanced suffix array.
gt tallymer occratio [options] -esa suffixerator-index
[options]
-esa [string]
specify suffixerator-index (mandatory option) (default:
undefined)
-minmersize [value]
specify minimum mer size for which to compute the
occurrence distribution (default: 0)
-maxmersize [value]
specify maximum mer size for which to compute the
occurrence distribution (default: 0)
-step [value]
specify step size when specifying mer sizes (default:
1)
-mersizes
specify mer sizes as non-empty sequence of non decreasing
positive integers
-output
use combination of the following keywords: unique
nonunique nonuniquemulti relative total to specify kind of output
-scan [yes|no]
read suffixerator-index sequentially instead of mapping
it to memory (default: no)
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit
Report bugs to <kurtz@zbh.uni-hamburg.de>.