graphlan - circular representations of taxonomic and phylogenetic
trees
graphlan [-h] [--format ['output_image_format']]
[--warnings WARNINGS] [--positions POSITIONS] [--dpi image_dpi] [--size
image_size] [--pad pad_in] [--external_legends] [-v] input_tree
output_image
GraPhlAn is a software tool for producing high-quality circular
representations of taxonomic and phylogenetic trees. It focuses on concise,
integrative, informative, and publication-ready representations of
phylogenetically- and taxonomically-driven investigation.
- input_tree
- the input tree in PhyloXML format
- output_image
- the output image, the format is guessed from the extension unless
--format is given. Available file formats are: png, pdf, ps, eps,
svg
- -h, --help
- show this help message and exit
- --format
['output_image_format']
- set the format of the output image (default none meaning that the format
is guessed from the output file extension)
- --warnings
WARNINGS
- set whether warning messages should be reported or not (default 1)
- --positions
POSITIONS
- set whether the absolute position of the points should be reported on the
standard output. The two cohordinates are r and theta
- --dpi image_dpi
- the dpi of the output image for non vectorial formats
- --size
image_size
- the size of the output image (in inches, default 7.0)
- --pad pad_in
- the distance between the most external graphical element and the border of
the image
- --external_legends
- specify whether the two external legends should be put in separate file or
keep them along with the image (default behavior)
- -v, --version
- Prints the current GraPhlAn version and exit
The software was written by Nicola Segata
<nsegata@hsph.harvard.edu>
This manpage was written by Andreas Tille for the Debian
distribution and can be used for any other usage of the program.