DOKK / manpages / debian 12 / kmc / kmc_tools-histogram.1.en
KMC_TOOLS-HISTOGRAM(1)   KMC_TOOLS-HISTOGRAM(1)

kmc_tools-histogram - produce histogram of k-mer occurrences

kmc_tools histogram <inputdb> [input_params] <output>

This command produces a histogram of k-mer occurrences.

For each input there are additional parameters:

-ci<value>

exclude k-mers occurring less than <value> times

-cx<value>

exclude k-mers occurring more of than <value> times

kmc_tools histogram wy_kmc2 -ci3 -cx1000 histo.txt

KMC was originally written by:

•Sebastian Deorowicz ( <sebastian.deorowicz@polsl.pl>)

•Marek Kokot

•Szymon Grabowski

•Agnieszka Debudaj-Grabysz

KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.