| Bio::AlignIO::psi(3pm) | User Contributed Perl Documentation | Bio::AlignIO::psi(3pm) |
Bio::AlignIO::psi - Read/Write PSI-BLAST profile alignment files
This module will parse PSI-BLAST output of the format seqid XXXX
This is a parser for psi-blast blocks.
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Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
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Email jason@bioperl.org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::AlignIO::psi->new(); Function: Builds a new Bio::AlignIO::psi object Returns : Bio::AlignIO::psi Args :
Title : next_aln Usage : $aln = $stream->next_aln() Function: returns the next alignment in the stream Returns : Bio::Align::AlignI object Args : NONE
See Bio::Align::AlignI
Title : write_aln Usage : $stream->write_aln(@aln) Function: writes the NCBI psi-format object (.aln) into the stream Returns : 1 for success and 0 for error Args : Bio::Align::AlignI object
Bio::Align::AlignI
| 2021-08-15 | perl v5.32.1 |