DOKK / manpages / debian 12 / libbio-perl-perl / Bio::Matrix::PSM::IO::psiblast.3pm.en
Bio::Matrix::PSM::IO::psiblast(3pm) User Contributed Perl Documentation Bio::Matrix::PSM::IO::psiblast(3pm)

Bio::Matrix::PSM::IO::psiblast - PSM psiblast parser

See Bio::Matrix::PSM::IO for documentation

Parser for ASCII matrices from PSI-BLAST (blastpgp program in BLAST distribution).

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rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

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 Title   : new
 Usage   : my $psmIO  =  Bio::Matrix::PSM::IO->new(-format=>'psiblast', 
                                                  -file=>$file);
 Function: Associates a file with the appropriate parser
 Throws  :
 Example :
 Args    :
 Returns : Bio::Matrix::PSM::ProtMatrix->new(@args);

 Title   : next_psm
 Usage   : my $psm = $psmIO->next_psm();
 Function: Reads the next PSM from the input file, associated with this object
 Throws  : None
 Returns : Bio::Matrix::PSM::ProtPsm object
 Args    : none
2021-08-15 perl v5.32.1