| Bio::Tools::Coil(3pm) | User Contributed Perl Documentation | Bio::Tools::Coil(3pm) |
Bio::Tools::Coil - parser for Coil output
use Bio::Tools::Coil
my $parser = Bio::Tools::Coil->new();
while( my $sp_feat = $parser->next_result($file) ) {
#do something
#eg
push @sp_feat, $sp_feat;
}
Parser for Coil output
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Based on the EnsEMBL module Bio::EnsEMBL::Pipeline::Runnable::Protein::Coil originally written by Marc Sohrmann (ms2@sanger.ac.uk) Written in BioPipe by Balamurugan Kumarasamy <savikalpa@fugu-sg.org> # Please direct questions and support issues to <bioperl-l@bioperl.org> # Cared for by the Fugu Informatics team (fuguteam@fugu-sg.org)
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : parse_results
Usage : obj->parse_results
Function: Parses the coil output. Automatically called by
next_result() if not yet done.
Example :
Returns :
Title : next_result
Usage : while($feat = $coil->next_result($file)) {
# do something
}
Function: Returns the next protein feature of the coil output file
Returns :
Args :
Title : _result Usage : $feat = $obj->_result() Function: internal Example : Returns :
Title : _add_prediction() Usage : $obj->_add_prediction($feat) Function: internal Example : Returns :
Title : _predictions_parsed Usage : $obj->_predictions_parsed Function: internal Example : Returns : TRUE or FALSE
Title : create_feature Usage : obj->create_feature(\%feature) Function: Internal(not to be used directly) Returns : Args :
Title : _read_fasta Usage : obj->_read_fasta($file) Function: Internal(not to be used directly) Returns : Args :
| 2021-08-15 | perl v5.32.1 |