| Bio::Tools::Prints(3pm) | User Contributed Perl Documentation | Bio::Tools::Prints(3pm) |
Bio::Tools::Prints - Parser for FingerPRINTScanII program
use Bio::Tools::Prints;
my $prints_parser = Bio::Tools::Prints->new(-fh =>$filehandle );
while( my $prints_feat = $prints_parser->next_result ) {
push @prints_feat, $prints_feat;
}
PRINTScan II is a PRINTS fingerprint identification algorithm. Copyright (C) 1998,1999 Phil Scordis
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://github.com/bioperl/bioperl-live/issues
bala@tll.org.sg juguang@tll.org.sg
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Tools::Prints->new(-fh=>$filehandle);
Function: Builds a new Bio::Tools::Prints object
Returns : Bio::Tools::Prints
Args : -filename
-fh (filehandle)
Title : next_result Usage : my $feat = $prints_parser->next_result Function: Get the next result set from parser data Returns : L<Bio::SeqFeature::Generic> Args : none
Title : create_feature Usage : my $feat=$prints_parser->create_feature($feature,$seqname) Function: creates a SeqFeature Generic object Returns : L<Bio::SeqFeature::FeaturePair> Args :
Title : print_sac Usage : $prints_parser->print_sac($print_sac) Function: get/set for print_sac Returns : Args :
Title : seqname Usage : $prints_parser->seqname($seqname) Function: get/set for seqname Returns : Args :
| 2021-08-15 | perl v5.32.1 |