SWISS::CCcatalytic_activity
SWISS::CCcofactor represents a comment on the topic
'CATALYTIC ACTIVITY' within a Swiss-Prot or TrEMBL entry as specified in the
user manual http://www.expasy.org/sprot/userman.html . Comments on other
topics are stored in other types of objects, such as SWISS::CC (see
SWISS::CCs for more information).
Collectively, comments of all types are stored within a SWISS::CCs
container object.
- topic
- The topic of this comment ('CATALYTIC ACTIVITY').
- form
- The protein form concerned by this comment (undef/empty =
canonical/displayed form OR unknown)
- The "text" version of this comment (without evidences and new
lines).
- activity_rhea
- The rhea id (e.g. RHEA:18037) of the reaction (only for new structured CC
CATALYTIC ACTIVITY)
- activity_rhea(
$new_rhea_id, $new_optional_reaction_ev )
- Set rhea activity to $new_rhea_id (and reaction ev
to $new_optional_reaction_ev if provided) (only
for new structured CC CATALYTIC ACTIVITY)
- activity_reaction
- The reaction txt (e.g. agmatine + H2O = N-carbamoylputrescine +
NH4(+))
- activity_reaction(
$new_reaction_txt )
- Set reaction txt to $new_reaction_txt (on old
unstructured format: extra $ev could be
added)
- activity_ec
- The reaction EC (e.g. 3.5.3.12)
- activity_ec(
$new_reaction_ec, , $new_optional_reaction_ev )
- Set reaction EC to $new_reaction_ec (and reaction
ev to $new_optional_reaction_ev if provided) (only
for new structured CC CATALYTIC ACTIVITY)
- activity_participant
- The reaction participants as a String Array (e.g. [
"ChEBI:CHEBI:15377", "ChEBI:CHEBI:28938",
"ChEBI:CHEBI:58145", "ChEBI:CHEBI:58318" ])
(participant are shown as dbtype:id e.g. in "ChEBI:CHEBI:15377"
CheBI is db type, CHEBI:15377 is (CheBi) id) (only for new structured CC
CATALYTIC ACTIVITY)
- activity_participant(
$new_participant_array )
- Set reaction participants to
$new_participant_array (array of strings) (only
for new structured CC CATALYTIC ACTIVITY)
- directions
- The directions: Array of direction structures as hash e.g. [ { 'txt' =>
'left-to-right', 'rhea' => 'RHEA:16846', 'ev' =>
'{ECO:0000269|PubMed:29420286}' } ] p.s. in well formed UniProtKB data
'txt' will be 'right-to-left' or 'left-to-right' (in that order); there
should be no more than 2 directions (minimum: 0)
- direction(
$new_directions )
- Set directions Array to $new_directions ... (only
for new structured CC CATALYTIC ACTIVITY)
- new
- fromText
- toString
- Returns a string representation of this comment.
Hey! The above document had some coding errors, which are
explained below:
- Around line 293:
- =back doesn't take any parameters, but you said =back =head1 Methods
- Around line
347:
- =back doesn't take any parameters, but you said =back =head2 Standard
methods