DOKK / manpages / debian 12 / libvcflib-tools / permuteGPAT++.1.en
PERMUTEGPAT++(1) permuteGPAT++ (VCF phenotype) PERMUTEGPAT++(1)

permuteGPAT++

permuteGPAT++ -f gpat.txt -n 5 -s 1

permuteGPAT++ is a method for adding empirical p-values to a GPAT++ score.



     Currently **permuteGPAT++** only supports wcFst, but will be extended.    
OUTPUT: **permuteGPAT++** will append three additional columns:


        1. The number of successes                         


        2. The number of trials                            


        3. The empirical p-value                           
file:    f   -- argument: the input file     
number:  n   -- argument: the number of permutations to run for each value [1000]
success: s   -- argument: stop permutations after 's' successes [1]
Type: phenotype

0
Success
Failure

vcflib(1)

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

Erik Garrison and vcflib contributors.

permuteGPAT++ (vcflib)