| PERMUTESMOOTH(1) | permuteSmooth (VCF statistics) | PERMUTESMOOTH(1) |
permuteSmooth
permuteSmooth -s wcFst.smooth.txt -f wcFst.txt -n 5 -s 1
permuteSmooth is a method for adding empirical p-values smoothed wcFst scores.
Required:
file: f -- argument: original wcFst data
smoothed: s -- argument: smoothed wcFst data
format: y -- argument: [swcFst, segwcFst] Optional:
number: n -- argument: the number of permutations to run for each value [1000]
success: u -- argument: stop permutations after 's' successes [1]
success: x -- argument: number of threads [1] OUTPUT: **permuteSmooth** will append three additional columns:
1. The number of successes
2. The number of trials
3. The empirical p-value Type: statistics
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
Erik Garrison and vcflib contributors.
| permuteSmooth (vcflib) |