| VCFENTROPY(1) | vcfentropy (VCF metrics) | VCFENTROPY(1) |
vcfentropy
vcfentropy options
Annotate VCF records with the Shannon entropy of flanking sequence. Anotates the output VCF file with, for each record, EntropyLeft, EntropyRight, EntropyCenter, which are the entropies of the sequence of the given window size to the left, right, and center of the record. Also adds EntropyRef and EntropyAlt for each alt.
options:
-f, --fasta-reference FASTA reference file to use to obtain flanking sequences
-w, --window-size Size of the window over which to calculate entropy Type: metrics
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
Erik Garrison and vcflib contributors.
| vcfentropy (vcflib) |