| VCFFLATTEN(1) | vcfflatten (VCF transformation) | VCFFLATTEN(1) |
vcfflatten
vcfflatten [options][file] -h –help display this help message and exit. -i –ignore-errors do not flatten locus if `AF' is not specified.
Removes multi-allelic sites by picking the most common alternate. Requires allele frequency specification `AF' and use of `G' and `A' to specify the fields which vary according to the Allele or Genotype. VCF file may be specified on the command line or piped as stdin.
Type: transformation
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
Erik Garrison and vcflib contributors.
| vcfflatten (vcflib) |