NAME

vcfremoveaberrantgenotypes

SYNOPSIS

vcfremoveaberrantgenotypes

DESCRIPTION

strips samples which are homozygous but have observations implying heterozygosity. Remove samples for which the reported genotype (GT) and observation counts disagree (AO, RO).

OPTIONS

Type: transformation

EXIT VALUES

0: Success
not 0: Failure

OTHER

LICENSE

AUTHORS

Erik Garrison and vcflib contributors.

vcfremoveaberrantgenotypes (vcflib)