| VCFSAMPLEDIFF(1) | vcfsamplediff (VCF transformation) | VCFSAMPLEDIFF(1) |
vcfsamplediff
vcfsamplediff options [ ... ]
Establish putative somatic variants using reported differences between germline and somatic samples. Tags each record where the listed sample genotypes differ with . The first sample is assumed to be germline, the second somatic. Each record is tagged with ={germline,somatic,loh} to specify the type of variant given the genotype difference between the two samples.
options:
-s --strict Require that no observations in the germline support the somatic alternate. Type: transformation
Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.
Erik Garrison and vcflib contributors.
| vcfsamplediff (vcflib) |