DOKK / manpages / debian 12 / mcaller / compare_genomes.1.en
COMPARE_GENOMES.PY(1) User Commands COMPARE_GENOMES.PY(1)

compare_genomes.py - find methylation in nanopore reads

usage: compare_genomes.py [-h] --bed1 BED1 --bed2 BED2 [-g GENOME_ALIGNMENT]

[-v]

Compare methylation between two genomes by probabilities of methylation for aligned positions

show this help message and exit
bed file 1 with verbose output from make_bed.py
bed file 2 with verbose output from make_bed.py
an xmfa file from mauve (if absent, alignments assumed to be to the same reference genome)
print version
June 2021 compare_genomes.py 1.0.3+git20210331.f7a616a