Single morphological operations:

-binarise:

binarise volume using the input range

-clamp:

clamp volume using the input range

-pad:

pad volume with respect to the current kernel (-background to specify value)

-erosion:

do a single erosion

-dilation:

do a single dilation

-median_dilation:

do a single median dilation (note: this is not a median filter!)

-open:

open: dilation(erosion(X))

-close:

close: erosion(dilation(X))

-lowpass:

lowpass filter: close(open(X))

-highpass:

highpass filter: X - lowpass(X)

-convolve:

convolve file with kernel

-distance:

distance transform

-group:

label groups in ascending order

Successive morphological operations:

-successive:

Successive operations (Maximum: 100)

B[floor:ceil:fg:bg] - binarise in the range, using foreground and background K[floor:ceil:bg] - clamp between the specified range. Set other voxels to 'bg' (default: 0) P[bg] - pad volume with respect to the current kernel using 'bg' (default: 0) E - erosion D - dilation M - median dilation O - open C - close L - lowpass filter H - highpass filter X - convolve F - distance transform (binary input only - not checked) G - Label the groups in the volume in ascending order R[TYPE|file.kern] - (2D04|2D08|3D06|3D26) or read in a kernel file W[file.mnc] - write out current results I[cmp.mnc] - local xcorr between current file and cmp.mnc Default: "B"

Generic options for all commands:

-help:

Print summary of command-line options and abort

-version:

Print version number of program and exit

mincmorph -help