DOKK / manpages / debian 12 / murasaki-common / mauveAlignment2anchors.pl.1.en
MAUVEALIGNMENT2ANCHORS(1) User Contributed Perl Documentation MAUVEALIGNMENT2ANCHORS(1)

mauveAlignment2anchors - converts a Mauve alignment into Murasaki anchor format based on gapped alignment data (each gap triggers a new anchor). Note this refers to the Mauve alignment format, not the LAGAN .alignment file that Mauve also outputs.

mauveAlignment2anchors <input> [output]

  --autoout -- create output file name automatically (on by default)
  --noautoout -- disable the above "autoout" option
2021-08-15 perl v5.32.1