| SIMPAL(1) | User Contributed Perl Documentation | SIMPAL(1) |
simpal -- proof of concept
simpal.pl [options] <ref seq> <target seq> [target2 target3 ...]
Set options by something like --tolerance=5 or -t 5 or whatever.
maxLoop -- specifies max separation for the ends of the palindromes
maxDistance -- specifies the maximum difference in palindrome length
when comparing palindromes
tolerance -- max permissible misses in palindromes between sequences
Setting either to -1 means no limit
seedlength -- length of seeds to use for finding palindromes
| 2021-08-15 | perl v5.32.1 |