CSV2XML(1) | NCBI Entrez Direct User's Manual | CSV2XML(1) |
csv2xml, gbf2ref, gbf2xml, json2xml, scn2xml, tbl2xml - transmute to XML
csv2xml|scn2xml|tbl2xml [-set tag] [-rec tag] [-skip N] [-header] [-lower|-upper] [-indent|-flush] columnName1 ...
gbf2ref
gbf2xml
json2xml [-set tag] [-rec tag] [-nest flat|recurse|plural|singular|depth|element]
These commands all simply invoke corresponding transmute(1) modes; each reads a stream of data from standard input, converts it to XML suitable for -path navigation, and writes the result to standard output. Specifically:
There is also an analogous asn2xml wrapper corresponding to transmute -a2x (converting text ASN.1 to XML), but Debian systems install it to /usr/lib/ncbi-entrez-direct/bin to avoid conflicting with the ncbi-tools-bin package's asn2xml(1).
See transmute(1).
ref2pmid(1), transmute(1), xml2fsa(1), xml2tbl(1), xtract(1).
2023-02-21 | NCBI |