NAME

pxrms - manual page for pxrms 1.3

SYNOPSIS

pxrms [OPTIONS]...

DESCRIPTION

Remove sequences by label. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN. Results are written in fasta format.

OPTIONS

-s, --seqf=FILE: input nucleotide sequence file, STDIN otherwise
-n, --names=CSL: names sep by commas (NO SPACES!)
-f, --namesf=FILE: names in a file (each on a line)
-r, --regex=STRING: match tip labels by a regular expression
-c, --comp: take the complement (i.e. remove any taxa not in list)
-o, --outf=FILE: output sequence file, STOUT otherwise
-h, --help: display this help and exit
-V, --version: display version and exit
-C, --citation: display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown, Joseph F. Walker, Stephen A. Smith (blackrim)

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

July 2021

pxrms 1.3