NAME

pxstrec - manual page for pxstrec 1.3

SYNOPSIS

pxstrec [OPTIONS]... FILES

DESCRIPTION

This will conduct state reconstruction analyses.

OPTIONS

-d, --dataf=FILE: input data file
-w, --datawide: data is in wide format so (001 instead of 2)
-z, --dataz: data is in probability format (0,1,0,0)
-t, --treef=FILE: input tree file
-c, --conf=FILE: configuration file

-n, --outstnum=FILE output file for stochastic mapping number

-a, --outstnumany=FILE output file for stochastic mapping number any

-m, --outsttim=FILE output file for stochastic mapping duration

-p, --periods=NUMS: comma separated times
-l, --logf=FILE: log file, STOUT otherwise
-o, --outanc=FILE: output file for ancestral calc
-s, --silent: less verbose output (default: false)
-h, --help: display this help and exit
-V, --version: display version and exit
-C, --citation: display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Stephen A. Smith (blackrim)

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

July 2021

pxstrec 1.3