NAME

picopore-rename - renaming groups and datasets within Oxford Nanopore Technologies FAST5 files

SYNOPSIS

[-h] -p PATTERN -r REPLACEMENT [-v] [-y] [-t INT] [--prefix STR] [--skip-root] [--print-every INT] [input [input ...]]

A tool for renaming groups and datasets within Oxford Nanopore Technologies FAST5 files

-h, --help: show this help message and exit
-p PATTERN, --pattern PATTERN: String or regex to replace
-r REPLACEMENT, --replacement REPLACEMENT: String or regex replacement for PATTERN
-v, --version: show version number and exit
-y: skip confirm step
-t INT, --threads INT: number of threads (Default: 1)
--prefix STR: add prefix to output files to prevent overwrite
--skip-root, --no-skip-root: ignore files in root input directories for albacore realtime compression (Default: --no-skip-root)
--print-every INT: print a dot every approximately INT files, or -1 to silence (Default: 100)

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.

June 2020

picopore-rename 1.2.0