picopore-test - compresses to temporary files and checks that all
datasets and attributes are equal
picopore-test [-h] --mode
{lossless,deep-lossless,raw} [--revert] [--fastq] [--summary] [--manual STR]
[-v] [-y] [-t INT] [--prefix STR] [--skip-root] [--print-every INT] [input
[input ...]]
A tool for reducing the size of an Oxford Nanopore Technologies
dataset without losing any data
picopore-test compresses to temporary files and checks that all
datasets and attributes are equal (lossless modes only)
- input
- list of directories or fast5 files to shrink
- -h, --help
- show this help message and exit
- --mode
{lossless,deep-lossless,raw}
- choose compression mode
- --revert
- reverts files to original size (lossless modes only)
- --fastq,
--no-fastq
- retain FASTQ data (raw mode only) (Default: --fastq)
- --summary,
--no-summary
- retain summary data (raw mode only) (Default: --nosummary)
- --manual
STR
- manually remove only groups whose paths contain STR (raw mode only,
regular expressions permitted, overrides defaults)
- -v, --version
- show version number and exit
- -y
- skip confirm step
- -t INT, --threads
INT
- number of threads (Default: 1)
- --prefix
STR
- add prefix to output files to prevent overwrite
- --skip-root,
--no-skip-root
- ignore files in root input directories for albacore realtime compression
(Default: --no-skip-root)
- --print-every
INT
- print a dot every approximately INT files, or -1 to silence
(Default: 100)
This manpage was written by Andreas Tille for the Debian
distribution and
can be used for any other usage of the program.