ParseLog.py - Parses records in the console log of pRESTO
modules
usage: ParseLog.py [--version] [-h] [-o OUT_FILES [OUT_FILES
...]]
- [--outdir OUT_DIR] [--outname OUT_NAME] [--delim DELIMITER DELIMITER
DELIMITER] -l RECORD_FILES [RECORD_FILES ...] -f FIELDS
[FIELDS ...]
Parses records in the console log of pRESTO modules
- -o OUT_FILES [OUT_FILES
...]
- Explicit output file name(s). Note, this argument cannot be used with the
--failed, --outdir, or --outname arguments. If
unspecified, then the output filename will be based on the input
filename(s). (default: None)
- --outdir
OUT_DIR
- Specify to changes the output directory to the location specified. The
input file directory is used if this is not specified. (default:
None)
- --outname
OUT_NAME
- Changes the prefix of the successfully processed output file to the string
specified. May not be specified with multiple input files. (default:
None)
- --delim DELIMITER
DELIMITER DELIMITER
- A list of the three delimiters that separate annotation blocks, field
names and values, and values within a field, respectively. (default: ('|',
'=', ','))
- table
- tab delimited table of the selected annotations.
- <user defined>
- annotation fields specified by the -f argument.
This manpage was written by Andreas Tille for the Debian
distribution and
can be used for any other usage of the program.