showtree - View and/or convert phylogenetic trees in the
terminal.
showtree [OPTIONS] [treefile]
View and/or convert phylogenetic trees in the terminal.
treefile is the filename of the for the file containing
trees in PRIME format.
- --help
- Display help (this text).
- -V, --version
- Print version and exit
- -e,
--show-edgetimes
- Show edge times
- -n,
-show-nodetimes
- Show node times
- -b,
--show-edgeweights
- Show edge weights (i.e. branch lengths)
- -x,
--show-tot-edgetime
- Show total edge time instead of tree
- -y,
--show-tot-edgeweight
- Show total edge weight instead of tree
- -c,
--read-edge-times-after-colon
- Read edge times after colon
- -p,
--convert-and-output-tree-in-prime-format
- Convert and output tree in PRIME format
- -i, --show-id
- Show ID (only valid together with -p)
- -S,
--read-tree-from-stdin
- Read tree from STDIN (no <treefile> nor <tree> needed)
- -f, --format
asciidrawing|prime|newick|simplenewick
- The output format. Default is asciidrawing. Output formats:
newick - convert and output tree in NEWICK format
simplenewick - Simple newick format, no branch lengths. This
also enables reading of unbalanced trees.
prime - prime format
asciidrawing - an ascii drawing
- -t,
--tree-number
- Use the tree with this number. If not set all trees will be printed
out.
- -t,
--tree-number
- Use the tree with this number. If not set all trees will be printed out.
- 0
- Successful program execution.
- 1
- Some error occurred