prokka-biocyc_to_fasta_db - rapid annotation of prokaryotic
genomes
prokka-biocyc_to_fasta_db [options] [--datadir
biocyc_data_subdir] > proteins.faa
- --help
- This help.
- --verbose!
- Verbose progress (default '0').
- --datadir=s
- Path to data/ folder in BioCyc organism directory (default '').
- --sep=s
- Separator between EC/gene/product (default '~~~').
- --blank=s
- Replace empty EC/gene/product with this (default '').
- --pseudo!
- Include /pseudo genes (default '0').
- --hypo!
- Include 'hypothetical protein' genes (default '0').
- --minlen=i
- Minimum peptide length (default '0').