DOKK / manpages / debian 12 / python3-pyani / genbank_get_genomes_by_taxon.py.1.en
GENBANK_GET_GENOMES_BY_TAXON.PY(1) User Commands GENBANK_GET_GENOMES_BY_TAXON.PY(1)

genbank_get_genomes_by_taxon.py - genbank get genomes by taxon

usage: genbank_get_genomes_by_taxon.py [-h] -o OUTDIRNAME [-t TAXON] [-v] [-f]

[--noclobber] [-l LOGFILE]
[--format FORMAT] --email EMAIL [--retries RETRIES] [--batchsize BATCHSIZE] [--timeout TIMEOUT]

show this help message and exit
Output directory (required)
NCBI taxonomy ID
Give verbose output
Force file overwriting
Don't nuke existing files
Logfile location
Output file format [gbk|fasta]
Email associated with NCBI queries (required)
Number of Entrez retry attempts per request.
Entrez record return batch size
Timeout for URL connection (s)


This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.

July 2021 genbank_get_genomes_by_taxon.py 0.2.11