ktImportText - explore hierarchical metagenomic data with zoomable
pie charts
- Creates a Krona chart from text files listing quantities and
lineages.
- ktImportText \
- [options] \ text_1[,name_1] \ [text_2[,name_2]] \ ...
- text
- Tab-delimited text file. Each line should be a number followed by a list
of wedges to contribute to (starting from the highest level). If no wedges
are listed (and just a quantity is given), it will contribute to the top
level. If the same lineage is listed more than once, the values will be
added. Quantities can be omitted if -q is specified. Lines
beginning with "#" will be ignored. By default, separate
datasets will be created for each input (see [-c]).
- name
- A name to show in the list of datasets in the Krona chart (if multiple
input files are present and [-c] is not specified). By default, the
basename of the file will be used.
- [-o <string>]
- Output file name. [Default: 'text.krona.html']
- [-n <string>]
- Name of the highest level. [Default: 'all']
- [-q]
- Files do not have a field for quantity.
- [-c]
- Combine data from each file, rather than creating separate datasets within
the chart.
- [-u <string>]
- URL of Krona resources to use instead of bundling them with the chart
(e.g. "http://krona.sourceforge.net"). Reduces size of charts
and allows updates, though charts will not work without access to this
URL.