DOKK / manpages / debian 12 / rdp-alignment / rdp-alignment.1.en
RDP-ALIGNMENT(1) User Commands RDP-ALIGNMENT(1)

rdp-alignment: - Ribosomal Database Project (RDP) alignment tools package

rdp-alignment <subcommand> <options>

The Alignment tools package contains commands to do defined community analysis, pairwise alignment and hidden markov model (HMMER3 models, no training).

List of subcommands:

- Merge alignments
- Compute k-nearest-neighbors by pairwise alignment
- Detect insertion, deletion and substitution errors in sequences comparing to reference sequences
- Transfer a sequence alignment from protein sequences to nucleotide sequences
- remove partial sequences based on pairwise alignment to reference sequences
March 2015 RDP Library