| Bio::Roary::External::Makeblastdb(3pm) | User Contributed Perl Documentation | Bio::Roary::External::Makeblastdb(3pm) |
Bio::Roary::External::Makeblastdb - Wrapper around NCBIs makeblastdb command
version 3.13.0
Take in a fasta file and create a temporary blast database.
use Bio::Roary::External::Makeblastdb;
my $blast_database= Bio::Roary::External::Makeblastdb->new(
fasta_file => 'contigs.fa',
exec => 'makeblastdb'
);
$blast_database->run();
Returns the path to the temporary blast database files
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
| 2019-11-08 | perl v5.30.0 |