NAME

rnr-tii - computes the taxonomic instability index

DESCRIPTION

This is RnR-tii version 1.0 released by Andre J. Aberer in 2011-10-25.

This program computes the taxonomic instability index.

SYNTAX: rnr-tii -i <bootTrees> -n <runId> [-w <workingDir>] [-h] [-x <excludeFile>]

OBLIGATORY: -i <bootTrees>

A collection of bootstrap trees.

-n <runId>

An identifier for this run.

OPTIONAL -z <z>

The exponent used in the TII formula. Use small values to emphasize close relationships and vice versa. DEFAULT: 2

-w <workDir>

A working directory where output files are created.

-x <excludeFile>

Exclude the taxa in this file (one taxon per line) prior to computing the TII.

-h

This help file.

AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program.