DOKK / manpages / debian 12 / seer / R_mds.1.en
R_MDS(1) User Commands R_MDS(1)

R_mds - project distance matrix into lower number of dimensions

R_mds -k <filtered_kmers.txt> -p <pheno_file>

Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github wiki for more details

Distance matrix output by kmds
Phenotype file used by seer

Output prefix (default 'all_structure')
Number of dimensions to project into (default 3)
R executable (default 'which R')
Displays this message

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

March 2017 R_mds 1.1.2