NAME

rabema_prepare_sam - Prepare SAM For Rabema

SYNOPSIS

rabema_prepare_sam -i IN.sam -o OUT.sam

DESCRIPTION

Prepare SAM file for usage with RABEMA.

OPTIONS

-h, --help

Display the help message.

--version

Display version information.

-i, --in-file INPUT_FILE

Path to the input file. Valid filetype is: .sam.

-o, --out-file OUTPUT_FILE

Path to the output file. Valid filetype is: .sam.

--dont-check-sorting

Do not check sortedness.